PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001219.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 392aa    MW: 44370.7 Da    PI: 4.7607
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001219.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.0006174192523
                              TTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                              +C++ F++ ++L++Hi ++
  Itr_sc001219.1_g00005.1 174 HCNMKFKTEEELEQHIASC 192
                              7***************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF495992.29E-6169228IPR008974TRAF-like
Gene3DG3DSA:3.90.890.102.8E-4173209IPR013323SIAH-type domain
Gene3DG3DSA:3.90.890.108.4E-4210244IPR013323SIAH-type domain
PfamPF021764.2E-11216274IPR001293Zinc finger, TRAF-type
PROSITE profilePS5014512.391216262IPR001293Zinc finger, TRAF-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016567Biological Processprotein ubiquitination
GO:0004842Molecular Functionubiquitin-protein transferase activity
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MELLSIDGEV KPATLEKVKE EGLLLYCNLF DAEMVYKIAE EFLMGFASAC VDNTMGGLWS  60
SPGAVAVDIR QEMVEYLIRR SETFVAESIV LECTPDIGVF ANPYDIISGF IDDFAHSKRN  120
FFSHVSVWLS SDRREDRIED FVEELELNGF WLMSQREEVA KTLLRNVDFK TSYHCNMKFK  180
TEEELEQHIA SCNFRTLNCL NEGCDAVYSA GKLEEHDSNC PFKTLPCEQK CADSIMRRNM  240
DRHCITVCPM KLVNCPFYPV GCLFTIPQHT VGQHRAENLQ SHLICVLKLI HKEASLEALK  300
ERAELLEKAL SPERLSAAKD ARSLTFIIKA HNAKLGPLVG VKKSAESDAE DDKLTNDEDN  360
SMALSSMGKQ LYKNEVPTIL QTETQEDIRV TL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016500069.11e-177PREDICTED: uncharacterized protein LOC107818549
RefseqXP_016500076.11e-177PREDICTED: uncharacterized protein LOC107818549
RefseqXP_016500084.11e-177PREDICTED: uncharacterized protein LOC107818549
RefseqXP_016500092.11e-177PREDICTED: uncharacterized protein LOC107818549
RefseqXP_016500098.11e-177PREDICTED: uncharacterized protein LOC107818549
TrEMBLM0ZQ771e-168M0ZQ77_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000056441e-167(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA444233